PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001111.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 185aa    MW: 19759.1 Da    PI: 6.5202
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001111.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.7e-153582355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             y+G+r  ++  +Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Itr_sc001111.1_g00011.1 35 YRGIR--SRGEKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALRG 82
                             99996..66799*******843...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.6513490IPR001471AP2/ERF domain
SMARTSM003803.1E-283496IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-183491IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-263491IPR001471AP2/ERF domain
CDDcd000183.41E-153592No hitNo description
PRINTSPR003676.2E-73546IPR001471AP2/ERF domain
PfamPF008472.1E-93582IPR001471AP2/ERF domain
PRINTSPR003676.2E-77292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MADPYSRSQH HPGFYSVASP ATSRGGTSAG KHPMYRGIRS RGEKWVSEIR EPRKTTRIWL  60
GTYPTPEMAA AAYDVAALAL RGSEAVLNFP AHAPRYPVPA TSSPADIRNA ATAGAAIFQP  120
GTAASQPPAA APGGEYIDEE AIFDMPNLLV DMAGGMMVSP PRMNPLPSDD SPSWNSDAES  180
RLWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-132890163ATERF1
3gcc_A1e-132890163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304466.19e-63AP2 domain-containing family protein
SwissprotQ9FJ904e-44ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLB9GW611e-62B9GW61_POPTR; AP2 domain-containing family protein
STRINGPOPTR_0003s12120.13e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-42ERF family protein